Facility Publications

Broeckling CD, Prenni JE. Stacked injections of biphasic extractions for improved metabolomic coverage and sample throughput. Anal Chem. 2017 Dec 12. doi: 10.1021/acs.analchem.7b03654. [Epub ahead of print] PubMed PMID: 29231702.

Romero JJ, Liebig BE, Broeckling CD, Prenni JE, Hansen TR. Pregnancy-induced changes in metabolome and proteome in ovine uterine flushings. Biol Reprod. 2017 Aug 1;97(2):273-287. doi: 10.1093/biolre/iox078. PubMed PMID: 29044433.

Ferris RA, McCue PM, Borlee GI, Glapa KE, Martin KH, Mangalea MR, Hennet ML, Wolfe LM, Broeckling CD, Borlee BR. Model of Chronic Equine Endometritis Involving a Pseudomonas aeruginosa Biofilm. Infect Immun. 2017 Nov 17;85(12). pii: e00332-17. doi: 10.1128/IAI.00332-17. Print 2017 Dec. PubMed PMID: 28970274; PubMed Central PMCID: PMC5695105.

Shidore T, Broeckling CD, Kirkwood JS, Long JJ, Miao J, et al. (2017) The effector AvrRxo1 phosphorylates NAD in planta. PLOS Pathogens. 2017. 13(6): e1006442. https://doi.org/10.1371/journal.ppat.1006442.

Lily A. Arya,  Holly E. Richter, Eric Jelovsek, Marie Gantz, Sara Cichowski,  Halina Zyczynski, Keisha Dyer, Nazema Siddiqui, Cassandra Carberry, Corey Broeckling, Casey Morrow,  Purna Kashyap, Susie Meikle. Metabolites and microbial composition of stool of women with fecal incontinence: Study design and methods.   Neurology and Urodynamics. 2017.  DOI: 10.1002/nau.23360.

Sunah Kim, Karen Rossmassler, Corey D. Broeckling, Sarah Galloway, Jessica Prenni, Susan K. De Long, Impact of inoculum sources on biotransformation of pharmaceuticals and personal care products, Water Research, 2017, ISSN 0043-1354, http://dx.doi.org/10.1016/j.watres.2017.08.041.

Sheflin, Amy M; Borresen, Erica C; Kirkwood, Jay S; Boot, Claudia M; Whitney, Alyssa K; Lu, Shen; Brown, Regina J; Broeckling, Corey D; Ryan, Elizabeth P; Weir, Tiffany L; Dietary supplementation with rice bran or navy bean alters gut bacterial metabolism in colorectal cancer survivors. Molecular Nutrition & Food Research. 61.

Tembrock, Luke R; Broeckling, Corey D; Heuberger, Adam L; Simmons, Mark P; Stermitz, Frank R; Uvarov, Jessica M;  2017. Employing Two‐stage Derivatisation and GC–MS to Assay for Cathine and Related Stimulant Alkaloids across the Celastraceae. Phytochemical Analysis.

Fleischmann, Jacob; Broeckling, Corey D; Lyons, Sarah; Candida krusei form mycelia along agar surfaces towards each other and other Candida species. BMC microbiology. 17 60.

Hoxmeier, J Charles; Fleshman, Amy C; Broeckling, Corey D; Prenni, Jessica E; Dolan, Marc C; Gage, Kenneth L; Eisen, Lars; Metabolomics of the tick-Borrelia interaction during the nymphal tick blood meal. Scientific Reports. 7.

Salihovic, Samira; Ganna, Andrea; Fall, Tove; Broeckling, Corey D; Prenni, Jessica E; van Bavel, Bert; Lind, P Monica; Ingelsson, Erik; Lind, Lars; The metabolic fingerprint of p, p′-DDE and HCB exposure in humans. Environment international. 88: 60-66.

Heuberger, Adam L; Broeckling, Corey D; Sedin, Dana; Holbrook, Christian; Barr, Lindsay; Kirkpatrick, Kaylyn; Prenni, Jessica E; Evaluation of non-volatile metabolites in beer stored at high temperature and utility as an accelerated method to predict flavour stability. Food chemistry. 200: 301-307

Webb, Kimberly M; Freeman, Claire; Broeckling, Corey D; Metabolome profiling to understand the defense response of sugar beet (Beta vulgaris) to Rhizoctonia solani AG 2-2 IIIB. Physiological and Molecular Plant Pathology. 94: 108-117

Turner, Marie F; Heuberger, Adam L; Kirkwood, Jay S; Collins, Carl C; Wolfrum, Edward J; Broeckling, Corey D; Prenni, Jessica E; Jahn, Courtney E; Non-targeted Metabolomics in Diverse Sorghum Breeding Lines Indicates Primary and Secondary Metabolite Profiles Are Associated with Plant Biomass Accumulation and Photosynthesis. Frontiers in Plant Science. 7.

Fall, Tove; Salihovic, Samira; Brandmaier, Stefan; Nowak, Christoph; Ganna, Andrea; Gustafsson, Stefan; Broeckling, Corey D; Prenni, Jessica E; Kastenmüller, Gabi; Peters, Annette; Non-targeted metabolomics combined with genetic analyses identifies bile acid synthesis and phospholipid metabolism as being associated with incident type 2 diabetes. Diabetologia. 59: 2114-2124

Herrick, Jason R; Lyons, Sarah M; Greene, Alison F; Broeckling, Corey D; Schoolcraft, William B; Krisher, Rebecca L; Direct and osmolarity-dependent effects of glycine on preimplantation bovine embryos. PloS one. 11 e0159581

Broeckling, Corey D*; Ganna, Andrea; Layer, Mark; Brown, Kevin ; Sutton, Ben; Ingelsson, Erik; Peers, Graham; Prenni, Jessica E* “The 1-SToP Approach to Annotation of LC-MS Metabolomics Data” (2016) Analytical Chemistry, 1021/acs.analchem.6b02479.

Kirkwood JS, Broeckling CD, Donahue S, Prenni JE*, “A novel microflow LC-MS method for the quantitation of endocannabinoids in serum” (2016), Journal of Chromatography B, 1033-1034(15); 271-277.

Christoph Nowak; Samira Salihovic; Andrea Ganna; Stefan Brandmeier; Taru Tukiainen; Corey D Broeckling; Patrik K Magnusson; Jessica Prenni; Rui Wang-Sattler; Annette Peters; Konstantin Strauch; Thomas Meitinger; Vilmantas Giedraitis; Johan Ärnlöv; Christian Berne; Christian Gieger; Samuli Ripatti; Lars Lind; Nancy L Pedersen; Johan Sundström; Erik Ingelsson; Tove Fall “Metabolomics of insulin resistance and impaired insulin secretion: A multi-cohort Mendelian randomization study identifies causal effects on monounsaturated fatty acid and tyrosine level” (2016); PLOSOne, 11(2):e0148361

Samira Salihovic, Andrea Ganna, Tove Fall, Stefan Gustafsson, Corey D. Broeckling, Jessica E. Prenni, Bert van Bavel, P. Monica Lind, Erik Ingelsson, Lars Lind  “The metabolic fingerprint of p, p’-DDE and HCB exposure in humans” Environment International 88 (2016) 60-65.

Adewole OO, Erhabor GE, Adewole TO, Ojo AO, Harriet O, Wolfe LM, Prenni JE. Proteomic profiling of Eccrine sweat reveals its potential as a diagnostic biofluid for active tuberculosis.  Proteomics Clin Appl. (2016) Mar 7. doi: 10.1002/prca.201500071

Adam L. Heuberger; Corey D Broeckling; Dana Sedin; Christian Holbrook; Lindsay Guerdrum; Kaylyn Kirkpatrick; Jessica E Prenni “Evaluation of non-volatile metabolites in beer stored at high temperature and utility as an accelerated method to predict flavor stability” (2016) Food Chemistry, 200, 301-307.

Marie F.S. Turner; Jay S. Kirkwood; Adam L. Heuberger; Carl Collins; Ed Wolfrum; Corey D. Broeckling; Jessica E. Prenni; Courtney E. Jahn “Non-targeted metabolomics in diverse sorghum breeding lines indicates primary and secondary metabolite profiles are associated with plant biomass accumulation and photosynthesis” (2016) Frontiers in Plant Science, Jul 11;7:953. doi: 10.3389/fpls.2016.00953

Ganna A, Fall T, Salihovic S, Lee W, Broeckling CD, Kumar J, Hagg S, Stenemo M, Magnusson PKE, Prenni JE, Lind L, Pawitan Y, Ingelsson E “Large-scale non-targeted metabolomic profiling in three human population-based studies”  Metabolomics, (2016) 12:4.

Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG. “Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods”. J Chromatogr A. (2015) Sep 18;1412:43-51. doi: 10.1016/j.chroma.2015.07.108. Epub 2015 Aug 3.

Robison, F.M.; Heuberger, A.L.; Brick, M.A.; Prenni, J.E. Proteome Characterization of Leaves in Common Bean, Proteomes, 2015, 3(3), 236-248.

Kimberly Marie Webb, Ph.D.; William M Wintermantel; Navneet Kaur; Jessica E Prenni; Carolyn J Broccardo; Lisa M Wolfe; Laura L Hladky, 2015 “Differential abundance of proteins in response to Beet necrotic yellow vein virus during compatible and incompatible interactions in sugar beet containing Rz1 or Rz2” Physiological and Molecular Plant Pathology, volume 91, pg 96-105.

Forester, G.M.; Heuberger, A.L.; Broeckling, C.D.; Bauer, J.E.; Ryan, E.P. Consumption of Cooked Navy Bean Powders Modulate the Canine Fecal and Urine Metabolome. Current Metabolomics, 2015, 3, 90-101.

Szerlong, H. J.; Herman, J. A.; Krause, C. M.; DeLuca, J. G.; Skoultchi, A.; Winger, Q. A.; Prenni, J. E.; Hansen, J. C., Proteomic Characterization of the Nucleolar Linker Histone H1 Interaction Network. Journal of molecular biology 2015.

Hoxmeier, J. C.; Thompson, B. D.; Broeckling, C. D.; Small, P.; Foy, B. D.; Prenni, J.; Dobos, K. M., Analysis of the metabolome of Anopheles gambiae mosquito after exposure to Mycobacterium ulcerans. Scientific reports 2015, 5, 9242.

Sheflin, A. M.; Borresen, E. C.; Wdowik, M. J.; Rao, S.; Brown, R. J.; Heuberger, A. L.; Broeckling, C. D.; Weir, T. L.; Ryan, E. P., Pilot dietary intervention with heat-stabilized rice bran modulates stool microbiota and metabolites in healthy adults. Nutrients 2015, 7 (2), 1282-300.

Kruh-Garcia, N. A.; Wolfe, L. M.; Dobos, K. M., Deciphering the role of exosomes in tuberculosis. Tuberculosis (Edinb) 2015, 95 (1), 26-30.

Krisher, R. L.; Heuberger, A. L.; Paczkowski, M.; Stevens, J.; Pospisil, C.; Prather, R. S.; Sturmey, R. G.; Herrick, J. R.; Schoolcraft, W. B., Applying metabolomic analyses to the practice of embryology: physiology, development and assisted reproductive technology. Reproduction, fertility, and development 2015.

Ganna, A.; Salihovic, S.; Sundstrom, J.; Broeckling, C. D.; Hedman, A. K.; Magnusson, P. K.; Pedersen, N. L.; Larsson, A.; Siegbahn, A.; Zilmer, M.; Prenni, J.; Arnlov, J.; Lind, L.; Fall, T.; Ingelsson, E., Large-scale metabolomic profiling identifies novel biomarkers for incident coronary heart disease. PLoS genetics 2014, 10 (12), e1004801.

Kruh-Garcia N.A., Wolfe L.M., Chaisson L.H., Worodria W.O., Nahid P., Schorey J.S., Davis J.L, Dobos K.M. 2014 “Detection of Mycobacterium tuberculosis peptides in the exosomes of patients with active and latent M. tuberculosis infection using MRM-MS” PLOSOne DOI: 10.1371/journal.pone.0103811.

Webb K, Broccardo C, Prenni JE, Wintermantel W. (2014) “Proteomics Profiling of Sugar Beet (Beta vulgaris) Leaves during Rhizomania Compatible Interactions” Proteomes

Brandt LE, Ehrhart EJ, Scherman H, Olver CS, Bohn AA,Prenni JE(2014) “Characterization of the canine urinary proteome”  Veterinary Clinical Pathology, 1-14.

Broeckling CD., Afsar, FA, Neumann S, Ben-Hur A., Prenni JE “RAMClust: A Novel Feature Clustering Method Enables Spectral-Matching-Based Annotation for Metabolomics Data” (2014)Analytical Chemistry 86(14), 6812-6817.

Heuberger AL, Robison FM, Lyons SMA, Broeckling CD and Prenni JE (2014) Evaluating plant immunity using mass spectrometry-based metabolomics workflows. Front. Plant Sci. 5:291. doi: 10.3389/fpls.2014.00291

Henley, T., Reddivari, L., Broeckling, C.D., Bunnng, M., Miller, J., Avens, J.S., Stone, M., Prenni, J.E.& Vanamala, J. 2014 “American India Pale Ale matrix rich in xanthohumol is potent in suppressing proliferation and elevating apoptosis of human colon cancer cells” International Journal of Food Science and Technology, May 10, doi: 10.1111/ijfs.12570.

Heuberger AL, Robison FM, Prenni JE, Schwartz HF, Brick MA. “Changes in primary and secondary metabolism associated with tolerance to Sclerotinia sclerotiorum in dry bean.” Annual Report of the Bean Improvement Cooperative (2014). 57, 59-60.

Kumar J, Karlsson R, Broeckling CD, Prince JA, Hong MG, Prenni JE, Ingelsson E, Wiklund F 2014 “Associations of Body Mass Index and Obesity-Related Genetic Variants with Serum Metabolites”Current Metabolomics 2(1), 27-36.

Yang, W.; Catalanotti, C.; D’Adamo, S.; Wittkopp, T. M.; Ingram-Smith, C. J.; Mackinder, L.; Miller, T. E.; Heuberger, A. L.; Peers, G.; Smith, K. S.; Jonikas, M. C.; Grossman, A. R.; Posewitz, M. C., Alternative acetate production pathways in Chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production. Plant Cell 2014, 26 (11), 4499-518.

Weyman, P. D.; Beeri, K.; Lefebvre, S. C.; Rivera, J.; McCarthy, J. K.; Heuberger, A. L.; Peers, G.; Allen, A. E.; Dupont, C. L., Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis. Plant Biotechnol J 2014.

Heuberger, A. L.; Broeckling, C. D.; Kirkpatrick, K. R.; Prenni, J. E., Application of nontargeted metabolite profiling to discover novel markers of quality traits in an advanced population of malting barley. Plant Biotechnol J 2014, 12 (2), 147-60.

Alford, E. R.; Lindblom, S. D.; Pittarello, M.; Freeman, J. L.; Fakra, S. C.; Marcus, M. A.; Broeckling, C.; Pilon-Smits, E. A.; Paschke, M. W., Roles of rhizobial symbionts in selenium hyperaccumulation in Astragalus (Fabaceae). American journal of botany 2014, 101 (11), 1895-905.

Reisdorph N, Stearman R, Kechris K, Phang TL, Reisdorph R, Prenni J, Erle DJ, Coldren C, Schey K, Nesvizhskii A, Geraci M, 2013 “Hands on Workshops as an Effective Means of Learning Advanced Technologies Including Genomics, Proteomics, and Bioinformatics” Genomics, Proteomics, and Bioinformatics, Dec;11(6):368-77.

Schauer KL, Freund DM, Prenni JE, Curthoys NP, (2013) “Proteomics Profiling and Pathway Analysis of the Response of Rat Renal Proximal Convoluted Tubules to Metabolic Acidosis” AJP–Renal PhysiologySep 1;305(5):F628-40.

Broccardo, CJ, Hussey GS, Goehring L, Lunn P, Prenni JE (2013) “Proteomic Characterization of Equine Cerbrospinal Fluid” Journal of Equine Veterinary Science, 34(3) 451-458.

Freund DM, Prenni JE, Curthoys NP (2013) “Proteomics Profiling of the Mitochondrial Inner Membrane of Rat Renal Proximal Convoluted Tubules” Proteomics Aug;13(16):2495-9.

Fruend DM, Prenni JE (2013) “Improved Detection of Quantitative Differences Using a Combination of Spectral Counting and MS/MS Total Ion Current” Journal of Proteome Research,12 (4), pp 1996–2004.

Schauer, KL, Broccardo CJ, Webb KM, Covey PA, Prenni JE (2013) “Mass Spectrometry Contamination from Tinuvin 770, a Common Additive in Laboratory Plastics” Journal of Biomolecular Techniques, July, 2402-04.

Kalashnikova AA, Duane WD, McBryant SJ, Herman JA, Deluca J, Luger K, Prenni JE, Hansen JC (2013) “Linker Histone H1.0 Interacts with an Extensive Network of Proteins Involved in mRNA Metabolism” Nucleic Acids Research, April 1;41(7):4026-35.

Abdel-Ghany S, Day I, Heuberger AL, Broeckling CD, Reddy ASN. “Metabolic engineering of Arabidopsis for butanetriol production using bacterial genes.” Metabolic Engineering, Vol 20, 109-120. DOI: 10.1016/j.ymben.2013.10.003.

Barnes B, Wilson M, Carr P, Vitha M, Broeckling C, Heuberger A, Prenni J, Gregory J, Corcoran H, Snow N, Chopra S, Dhandapani R, Tawfall A, Sumner L, Boswell P, 2013 “ “Retention Projection” Enables Reliable Use of Shared Gas Chromatographic Retention Data Across Labs, Instruments, and Methods” Analytical Chemistry, 85(23), 11650-7.

Heuberger, A.L., Broeckling, C.D., Kirkpatrick K.R. and Prenni J.E. (2013) Application of nontargeted metabolite profiling to discover novel markers of quality traits in an advanced population of malting barley. Plant Biotechnol. J., doi: 10.1111/pbi.12122.

Weir TL, Manter DK, Sheflin AM, Barnett BA, Heuberger AL, Ryan EP (2013) Stool Microbiome and Metabolome Differences between Colorectal Cancer Patients and Healthy Adults. PLoS ONE 8(8): e70803. doi:10.1371/journal.pone.0070803

Broccardo CJ, Schauer KL, Kohrt WM, Schwartz RS, Murphy JP, Prenni JE (2013) “Multiplexed Analysis of Steroid Hormones in Human Serum Using Novel Microflow Tile Technology and LC-MS/MS” Journal of Chromatography B, Sep 1;934:16-21.

Kumar J, Broeckling CD, Wiklund F, Ingelsson E, Prenni JE, (2013) “Influence of Biological and Technical Covariates on Non-targeted Metabolite Profiling in a Large-scale Epidemiological Study”Current Metabolomics, 1(3), 220-226.

Shen, M, Broeckling CD, Chu EY, Ziegler G, Baxter IR, Prenni JE, Hoekenga OA, (2013) “Leveraging non-targeted metabolite profiling via statistical genomics” PLoS ONE 8(2): e57667. doi:10.1371/journal.pone.0057667

Broeckling CD, Heuberger AL, Prenni JE (2013) “Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry (UPLC-MS)” J Vis Exp. Mar 14;(73):e50242.

Ryan EP, Heuberger AL, Broeckling CD, Borresen E, Oillia C, Prenni JE (2013) “Advances in Nutritional Metabolomics” Current Metabolomics, 1, 109-120.

Hong, MG, Karlsson R, Magnusson PKE, Lewis MR, Isaacs W, Zheng LS, Xu J, Gronberg H, Ingelsson E, Pawitan Y, Broeckling CD, Prenni JE, Wiklund F, Prince JA 2013 “A Genome-Wide Assessment of Variability in Human Serum Metabolism” Human Mutation, Mar;34(3):515-24.

Freund DM, Prenni JE, Curthoys NP (2012) “Response of the Mitochondrial Proteome of Rat Renal Proximal Convoluted Tubules to Chronic Metabolic Acidosis” AJP – Renal Physiology 2012 Jan;304(2);F145-55.

Bisson GP, Mehaffy C, Broeckling C, Prenni J, Rifat D, Lun DS, Burgos M, Weissman D, Karakousis PC, Dobos K.(2012) “Upregulation of the phthiocerol dimycocerosate biosynthetic pathway by rifampicin-resistant, rpoB-mutant Mycobacterium tuberculosis.”J Bacteriol. 2012 Sep 21

Prenni JE, Vidal, M., Olver C.S. (2012) Preliminary Characterization of the murine memrane reticulocyte proteome.  Blood Cells, Molecules, and Diseases, Aug 15;49(2):74-82.

Cho, YS, Dobos KM, Prenni JE, Yang H, Hess A, Rosenkrands I, Andersen P, Ryoo SW, Bai GH, Brennan MJ, Izzo A, Bielefeldt-Ohmann H, Belisle JT*, (2012) “Deciphering the proteome of the in vivodiagnostic reagent “purified protein derivative” from Mycobacterium tuberculosis” Proteomics, 12, 979–991.

Bisson GP, Mehaffy C, Broeckling C, Prenni J, Rifat D, Lun DS, Burgos M, Weissman D, Karakousis PC, Dobos K., 2012 “Upregulation of the phthiocerol dimycocerosate biosynthetic pathway by rifampicin-resistant, rpoB-mutant Mycobacterium tuberculosis.” J Bacteriol. 2012 Sep 21

Heuberger AL, Broeckling C, Lewis M, Salazar L, Bouckaert P, Prenni, JE., 2012, Metabolomic profiling of beer reveals effect of temperature on non-volatile small molecules during short-term storage. Food Chemistry, Dec 1;135(3):1284-9.

Broeckling, C.D. Heuberger, A.L., Prince, J.A., Ingelsson, E., Prenni, J.E., Assigning precursor-product ion relationships in indiscriminant MS/MS data from non-targeted metabolite profiling studies.Metabolomics, 2012, 9:33-43.

Thompson MD, Mensack MM, Jiang W, Zhu Z, Lewis MR, McGinley JN, Brick MA, Thompson HJ. “Cell signaling pathways associated with a reduction in mammary cancer burden by dietary common bean (Phaseolus vulgaris L.).” Carcinogenesis. 2012 Jan;33(1):226-32.

Prenni AJ, Tobo1 Y, Garcia E, DeMott PJ, McCluskey CS, Kreidenweis SM, Prenni JE, Huffman JA, Pöhlker C, Pöschl U (2012) “The impact of rain on ice nuclei populations at a forested site in Colorado”Geophysical Research Letters doi:10.1029/2012GL053953.

Fujimoto S; Seebart C;  Guastafierro T; Prenni J;  Caiafa P; Zlatanova J (2011) “Proteome analysis of protein partners to nucleosomes containing canonical H2A or the variant histones H2A.Z or H2A.X“Biological Chemistry, Jan 1;393(1-2):47-61.

Machain-Williams C., Mammen MP, Zeidner NS, Beaty BJ, Prenni JE, Nisalak A, Blair CD (2011) “Association of Human Immune Response to Aedes aegypti Salivary Proteins with Dengue Disease Severity”,Parasite Immunol, 34(1): 15-22.

Prenni JE; Scherman H; Olver C, (2011) “Methods in Animal Proteomics” P.D. Eckersall & P.D. Whitfield (Eds), Types of Sample and Experimental Planning (pp 11-39).  John Wiley & Sons Lt

Al-Mubarak R, Vander Heiden J, Broeckling CD, Balagon M, Brennan PJ, Vissa VD. “Serum metabolomics reveals higher levels of polyunsaturated Fatty acids in lepromatous leprosy: potential markers for susceptibility and pathogenesis.” 2011 PLoS Negl Trop Dis. Sep;5(9):e1303.

Ryan E.P.; Heuberger A.L.; Weir T.L.; Barnett B.; Broeckling C.D.; Prenni J.E. “Rice Bran Fermented with Saccharomyces boulardii Generates Novel Metabolite Profiles with Bioactivity.” 2011.J Agric Food Chem. 59(5): 1862–1870.

Jensen RW, Rivest J, Li W, Vissa V. (2011) “DNA fingerprinting of Mycobacterium leprae strains using variable number tandem repeat (VNTR) – fragment length analysis (FLA).” J Vis Exp. Jul 15;(53)

O’Donoghue LE, Rivest JP, Duval DL. (2011) “Polymerase chain reaction-based species verification and microsatellite analysis for canine cell line validation.” Jul;23(4):780-5.

Kruh, N.; Troudt, J.; Izzo, A.; Prenni, JE; Dobos, KM. (2010) “Portrait of a Pathogen: TheMycobacterium tuberculosis Proteome In Vivo“PLoS One. Nov 11;5(11): e13938.

Seebart, C.;Prenni, J.;Tomschik, M.; Zlatanova, J. (2010) “New Nuclear Partners for Nucleosome Assembly Protein 1:  Unexpected Associations” Biochem. Cell Biol. 88(6): 927-936.

Goldstrohm  D.A.;Broeckling C.D.;Prenni J.E.;Curthoys N.P (2010) “Importance of Manual Validation for the Identification of Phosphopeptides using a Linear Ion Trap Mass Spectrometer” ,J  Biomol Tech., 22(1): 10–20.

Szerlong HJ;Prenni JE; Nyborg JK; Hansen JC. (2010)“Activator-dependent p300 acetylation of chromatin in vitro: enhancement of transcription by disruption of repressive nucleosome-nucleosome interations”.J Biol Chem. Aug 18.

Mehaffy, C.; Hess, A.;Prenni, JE.;Mathema, B.;Kreiswirth, B.;Dobos, K.M. (2010) “Descriptive proteomic analysis shows protein variability between closely related clinical isolates of Mycobacterium tuberculosisProteomics, Mar 9;10(10):1966-1984.

Wamsley, S.;Broeckling, C.; Hess, A.;Prenni, J.;Curthoys, N. “Proteomic Analysis of Brush Border Membrane Vesicles Isolated from Purified Proximal Convoluted Tubules”2010 Am J Physiol Renal Physiol, 298(6):F1323-31.

Mueller, N.H.; Walters, M.S.; Marcus, R.; Graf, L.L.; Prenni, J.E.; Gilden, D.; Silverstein, S.J.; Cohrs, R.J. (2010) “Identification of Phosphorylated Residues on Varicella-Zoster Virus Immediate Early Protein ORF6”J Gen Virol, May;91(Pt 5):1133-7.

Olver, C.S; Webb, T.L; Long, L.J.; Scherman, H.; Prenni, J.E.(2010) “Comparison of methods for albumin and immunoglobulin depletion from equine serum.” Vet Clin Pathol. Aug 18.

Okaysu, E; Freund DM; Prenni JE; Curthoys NP (2010) “Elucidation of Phosphoproteins Involved in the Renal Cellular Response to Acute Metabolic Acidosis” Journal of Undergraduate Research and Scholarly Excellence, 14-19.

Heuberger AL; Lewis MR; Chen M-H; Brick MA; Leach JE; Ryan EP; “Metabolomic and Functional Genomic Analyses Reveal Varietal Differences in Bioactive Compounds of Cooked Rice.” PLoS ONE, 2010. 5(9): e12915.

Broz AK, Broeckling CD, De-la-Peña C, Lewis MR, Greene E, Callaway RM, Sumner LW, Vivanco JM. “Plant neighbor identity influences plant biochemistry and physiology related to defense.” BMC Plant Biol. 2010 Jun 17;10:115.

Mensack MM, Fitzgerald VK, Ryan EP, Lewis MR, Thompson HJ, Brick MA. “Evaluation of diversity among common beans (Phaseolus vulgaris L.) from two centers of domestication using ‘omics’ technologies.” BMC Genomics. 2010 Dec 2;11:686

Mensack MM, Fitzgerald VK, Lewis MR, Thompson HJ. “Characterization of low molecular weight chemical fractions of dry bean (Phaseolus vulgaris) for bioactivity using Caenorhabditis elegans longevity and metabolite fingerprinting.” J Agric Food Chem. 2010 Jun 9;58(11):6697-705.

Wallenstein, M.D.; Hess, A.M.; Lewis, M.R.; Steltzer, H.;Ayres, E. “Decomposition of aspen leaf litter results in unique metabolomes when decomposed under different tree species.” Soil Biology & Biochemistry, Jan 2010, 1-7.

Dooley, G.P.; Reardon, K.F.; Prenni, J.E.; Legare, M.E.; Foradori, C.D.; Tessari, J.E.; and Hanneman, W.H. (2008) “Proteomic Analysis of Diaminochlorotriazine (DACT) Adducts in Wister Rat Pituitary Glands and L b T2 Rat Pituitary Cells” Chemical Research in Toxicology, Apr;21(4):844-51.

Bhamidi, S.; Scherman, M.S.; Rithner, C.D.; Prenni, J.E.; Chatterjee, D.; Khoo, K.; and McNeil, M.R. “The Identification and Location of Succinyl Residues and the Characterization of the Interior Arabinan Region Allows for a Model of the Complete Primary Structure of Mycobacterium Tuberculosis Mycolyl Arabinogalactan” Journal of Biological Chemistry, Feb 2008.

Bruemmer J; Lewis M; Prenni JE; Squires E; Hansen T (2007) “Gene Expression in the Equine Endometrium during Maternal Recognition of Pregnancy” Biology of Reproduction, 77, 98-b-98.

Prenni, J.E.; Avery, A.C.; Olver, C.S. (2007) “Proteomics:  A review and an example using the reticulocyte membrane proteome.” Veterinary Clinical Pathology, 36(1) 13-24.

Lyons, T.R.; Thorburn, J.; Ryan, P.W.; Thorburn, A.; Anderson, S.M.; Kassenbrock, C.K. (2007)“Regulation of the Pro-apoptotic Scaffolding Protein POSH by Akt “ Journal of Biological Chemistry,282(30), 21987-21997.

Dooley, G.P.; Prenni, J.E.; Cranmer, B.K.; Prentiss P.L.; Andersen, M.E.; Tessari, J.D. (2006)“Identification of a Novel Hemoglobin Adduct in Sprague Dawley Rats Exposed to Atrazine” Chemical Research In Toxicology, 19(5), 692-700.

Eckstein, T.M.; Chandrasekaran, S.; Mahapatra, S.; McNeil, M.R.; Chatterjee, D.; Rithner, C.D.; Ryan, P.W.; Belisle, J.T.; Inamine, J.M. (2006) “A Major Cell Wall Lipopeptide of Mycobacterium avium subspecies paratuberculosis“ J. Biol. Chem., 281(8), 5209-5215.